Index

A

add_meshes_to_plotter() (in module mesher)

assign_material_map() (mesher.myMesh method)

B

breakingCall() built-in function built-in function breakingCall() checkWallElement() computeVolumes() exportACEfields() exportPatientData() extractPlaqueBounds() extractPlaqueNodes() fastFixedBoundary() fcts1() findMaterialRatio() initializeAceFEM() loadCALCcoeff() loadFIBRcoeff() loadLRNCcoeff() loadMATXcoeff() loadMesh() materialInterp() materialTruthMask() myExport() postProcess() separateElements() separateNodes() setExportPath() setMaterials() setMaterialsNew() setMaterialsV2() setMaterialsV3() showSolutionParams() updateElements() ΔtMax() λg() λp() λp2()

C

check_points_inside_mesh() (in module mesher) checkWallElement() built-in function classify_surfaces() (in module meshConversion) cleanPtName() (in module nrrdAux) compareFields() (patientMain.myPatient method) compareHist() (patientMain.myPatient method) computeGeometricalFeatures() (patientMain.myPatient method)

computeRadii() (patientMain.myPatient method) computeScaleFactor() (in module patientMain) computeVolumes() built-in function computeVolumetricData() (in module nrrdAux) create_matlab_script() (in module mesher) create_mph_mesh() (mesher.myMesh method) create_spatial_grid() (in module mesher) create_volumetric_wall_mesh() (mesher.myMesh method)

E

estimate_radius_by_sections() (in module meshConversion) exportACEfields() built-in function exportPatientData() built-in function

extract_current_face_nodes() (in module meshConversion) extract_plot() (in module mesher) extractPlaqueBounds() built-in function extractPlaqueNodes() built-in function

F

fastFixedBoundary() built-in function fcts1() built-in function

find_common_dir() (in module mesher) findAllPtFields() (in module nrrdAux) findMaterialRatio() built-in function findPtData() (in module nrrdAux)

G

get3Dmesh() (in module postResults) get3DmeshWithFields() (in module postResults) get3DmeshWithMaterials() (in module postResults) get3DSlicesWithFields() (in module postResults) get3DslicesWithMaterials() (in module postResults) getClinicalData() (patientMain.myPatient method)

getCompareHist() (patientMain.myPatient method) getField() (patientMain.myPatient method) getFieldValues() (patientMain.myPatient method) getHist() (patientMain.myPatient method) getIndexes() (patientMain.myPatient method) getMaterials() (patientMain.myPatient method) getSlicemeshWithMaterials() (in module postResults)

I

importClassicResults() (in module postResults) importGrowthResults() (in module postResults) importMeshFromTXT module

importResults() (in module postResults) initializeAceFEM() built-in function

J

join_relative_paths() (in module mesher)

L

loadCALCcoeff() built-in function loadClinicalData() (patientMain.myPatient method) loadFEMJSON() (patientMain.myPatient method) loadFIBRcoeff() built-in function loadFields() (patientMain.myPatient method) loadLRNCcoeff() built-in function loadMaterialFromHDF5() (in module importMeshFromTXT)

loadMaterialFromTXT() (in module importMeshFromTXT) loadMaterials() (patientMain.myPatient method) loadMATXcoeff() built-in function loadMesh() built-in function loadMesh() (patientMain.myPatient method) loadMeshFromHDF5() (in module importMeshFromTXT) loadMeshFromTXT() (in module importMeshFromTXT) loadNRRD() (in module nrrdAux) loadNRRDcomposition() (in module nrrdAux)

M

main() (in module meshConversion) materialInterp() built-in function materialTruthMask() built-in function meshConversion module mesher module module importMeshFromTXT meshConversion mesher nrrdAux patientMain postResults

myExport() built-in function myMesh (class in mesher) myPatient (class in patientMain)

N

nrrdAux module

P

pathForResults() (in module postResults) patientMain module postProcess() built-in function

postProcessNRRD() (in module nrrdAux) postResults module prepare_matlab_script() (mesher.myMesh method)

R

readVariousFormats() (in module postResults)

run_bash_script() (mesher.myMesh method)

S

safe_increment() (in module patientMain) save_to_hdf() (mesher.myMesh method) save_wall_mesh() (mesher.myMesh method) saveMeshIsoView() (in module postResults) saveMeshIsoViewWithMaterialSlice() (in module postResults) saveSlice() (in module postResults) scale_meshes() (mesher.myMesh method) separateElements() built-in function separateNodes() built-in function set_out_path() (mesher.myMesh method) setExportPath() built-in function setMaterials() built-in function setMaterialsNew() built-in function

setMaterialsV2() built-in function setMaterialsV3() built-in function setUpNRRDField() (in module nrrdAux) show3Dmesh() (in module postResults) show3DmeshWithFields() (in module postResults) show3DmeshWithMaterials() (in module postResults) show3DslicesWithMaterials() (in module postResults) showClinicalData() (patientMain.myPatient method) showClinicalInfo() (patientMain.myPatient method) showFEMJSON() (patientMain.myPatient method) showField() (patientMain.myPatient method) showHist() (patientMain.myPatient method) showInfo() (patientMain.myPatient method) showMaterials() (patientMain.myPatient method) showMesh() (patientMain.myPatient method) showSolutionParams() built-in function

T

translate_meshes_to_origin() (mesher.myMesh method)

U

updateElements() built-in function

updateFEMJSON() (patientMain.myPatient method) updateMaterialsFromNodesInfo() (patientMain.myPatient method)

V

visualize_material_map() (mesher.myMesh method)

visualize_mesh() (mesher.myMesh method)

W

write_material_map() (mesher.myMesh method)

Δ

ΔtMax() built-in function

Λ

λg() built-in function λp() built-in function

λp2() built-in function